PH01000117G0920's details annotation
1.Annotation
ICBR annotation: ACR5, putative, expressed
Blast result AT1G69040 : 7.00E-113
Blast annotation: ACT domain repeat 4
2.Location
Scaffold: PH01000117
Strand: -
| Region | Start | End |
| gene | 673402 | 677494 |
| mRNA | 673402 | 677494 |
| exon | 673402 | 675202 |
| exon | 675346 | 675450 |
| exon | 675782 | 676414 |
| exon | 676630 | 676697 |
| exon | 676840 | 676954 |
| exon | 677005 | 677113 |
| exon | 677232 | 677494 |
| CDS | 674861 | 675202 |
| CDS | 675346 | 675450 |
| CDS | 675782 | 676414 |
| CDS | 676630 | 676697 |
| CDS | 676840 | 676954 |
| CDS | 677005 | 677113 |
| CDS | 677232 | 677305 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000007 | methylation, nucleobase-containing compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01842.24 | ACT | 150 | 213 |
| PF01842.24 | ACT | 372 | 432 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016597 | amino acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.