Annotation of co-expression genes

PH01000118G0190's details annotation

1.Annotation

ICBR annotation: polyadenylate-binding protein, putative, expressed

Blast result AT4G34110 : 0
Blast annotation: poly(A) binding protein 2

2.Location

Scaffold: PH01000118
Strand: +

RegionStartEnd
gene96678104089
mRNA96678104089
exon9667897945
exon9841198525
exon9945299570
exon99667100323
exon100414100491
exon100565100654
exon101491101625
exon101910101989
exon102229102406
exon102844103050
exon103333104089
CDS9778497945
CDS9841198525
CDS9945299570
CDS99667100323
CDS100414100491
CDS100565100654
CDS101491101625
CDS101910101989
CDS102229102406
CDS102844103050
CDS103333103578

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_153111
PF00076.21RRM_1129197
PF00076.21RRM_1220288
PF00076.21RRM_1323391
PF00658.17PABP595661

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA transportpolyadenylate-binding proteinko03013K13126
mRNA surveillance pathwaypolyadenylate-binding proteinko03015K13126
RNA degradationpolyadenylate-binding proteinko03018K13126

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0003723RNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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