PH01000118G0750's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G24290 : 7.60E-59
Blast annotation: Protein of unknown function (DUF1068)
2.Location
Scaffold: PH01000118
Strand: -
| Region | Start | End |
| gene | 496262 | 499644 |
| mRNA | 496262 | 499644 |
| exon | 496262 | 496810 |
| exon | 498275 | 499644 |
| CDS | 496449 | 496810 |
| CDS | 498275 | 498500 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000467 | response to desiccation, regulation of transcription, DNA-dependent, C2C2-Dof Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) ERF Transcription_Regulator(from PlantTFDB) AP2/ERF-ERF Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001169 | response to desiccation, Dof Transcription_Regulator(from PlantTFDB) C2C2-Dof Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06364.11 | DUF1068 | 9 | 182 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.