Annotation of co-expression genes

PH01000118G1580's details annotation

1.Annotation

ICBR annotation: integral membrane transporter family protein, putative, expressed

Blast result AT5G25050 : 2.50E-83
Blast annotation: Major facilitator superfamily protein

2.Location

Scaffold: PH01000118
Strand: -

RegionStartEnd
gene10597531062527
mRNA10597531062527
exon10597531060509
exon10610131061183
exon10612741061369
exon10615461062527
CDS10597931060509
CDS10610131061183
CDS10612741061369
CDS10615461061782

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000221growth factor activity,
sucrose synthase activity,
cell proliferation,
sucrose metabolic process,
extracellular region,
Starch_and_sucrose_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03092.15BT1136328

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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