PH01000118G1630's details annotation
1.Annotation
ICBR annotation: cell division control protein 48 homolog B, putative, expressed
Blast result AT2G03670 : 3.00E-177
Blast annotation: cell division cycle 48B
2.Location
Scaffold: PH01000118
Strand: -
| Region | Start | End |
| gene | 1093298 | 1097117 |
| mRNA | 1093298 | 1097117 |
| exon | 1093298 | 1093623 |
| exon | 1093697 | 1093774 |
| exon | 1093872 | 1093968 |
| exon | 1094354 | 1094482 |
| exon | 1094886 | 1095055 |
| exon | 1095128 | 1095412 |
| exon | 1095677 | 1095776 |
| exon | 1095922 | 1096029 |
| exon | 1096090 | 1096239 |
| exon | 1096376 | 1096431 |
| exon | 1096595 | 1096639 |
| exon | 1096745 | 1097117 |
| CDS | 1093321 | 1093623 |
| CDS | 1093697 | 1093774 |
| CDS | 1093872 | 1093968 |
| CDS | 1094354 | 1094482 |
| CDS | 1094886 | 1095055 |
| CDS | 1095128 | 1095412 |
| CDS | 1095677 | 1095776 |
| CDS | 1095922 | 1096029 |
| CDS | 1096090 | 1096239 |
| CDS | 1096376 | 1096431 |
| CDS | 1096595 | 1096639 |
| CDS | 1096745 | 1096921 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00004.28 | AAA | 64 | 200 |
| PF00004.28 | AAA | 335 | 470 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.