PH01000119G0780's details annotation
1.Annotation
ICBR annotation: ORC1 - Putative origin recognition complex subunit 1, expressed
Blast result AT4G14700 : 9.20E-77
Blast annotation: origin recognition complex 1
2.Location
Scaffold: PH01000119
Strand: -
| Region | Start | End |
| gene | 531412 | 539819 |
| mRNA | 531412 | 539819 |
| exon | 531412 | 531665 |
| exon | 531844 | 531927 |
| exon | 532712 | 532788 |
| exon | 533383 | 533452 |
| exon | 533652 | 533727 |
| exon | 534269 | 534392 |
| exon | 535242 | 535420 |
| exon | 535499 | 535556 |
| exon | 536195 | 536568 |
| exon | 538894 | 539819 |
| CDS | 531602 | 531665 |
| CDS | 531844 | 531927 |
| CDS | 532712 | 532788 |
| CDS | 533383 | 533452 |
| CDS | 533652 | 533727 |
| CDS | 534269 | 534392 |
| CDS | 535242 | 535420 |
| CDS | 535499 | 535556 |
| CDS | 536195 | 536568 |
| CDS | 538894 | 539044 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000808 | origin recognition complex |
| GO:0005634 | nucleus |
| GO:0006260 | DNA replication |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.