Annotation of co-expression genes

PH01000120G0360's details annotation

1.Annotation

ICBR annotation: GRAM and C2 domains containing protein, putative, expressed

Blast result AT1G03370 : 0.00E+00
Blast annotation: C2 calcium/lipid-binding and GRAM domain containing protein

2.Location

Scaffold: PH01000120
Strand: +

RegionStartEnd
gene213456220056
mRNA213456220056
exon213456214513
exon214977216356
exon216656216838
exon216968217248
exon217333217449
exon217624217644
exon218037218197
exon218335218500
exon218599218871
exon218955220056
CDS214099214513
CDS214977216356
CDS216656216838
CDS216968217248
CDS217333217449
CDS217624217644
CDS218037218197
CDS218335218500
CDS218599218871
CDS218955219185

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00168.29C224124
PF16016.4DUF4782329477
PF00168.29C2613711
PF16016.4DUF47829001042

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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