PH01000120G1210's details annotation
1.Annotation
ICBR annotation: chlorophyll A-B binding protein, putative, expressed
Blast result AT1G61520 : 7.00E-109
Blast annotation: photosystem I light harvesting complex gene 3
2.Location
Scaffold: PH01000120
Strand: +
| Region | Start | End |
| gene | 764685 | 767543 |
| mRNA | 764685 | 767543 |
| exon | 764685 | 766509 |
| exon | 766671 | 766732 |
| exon | 766866 | 767543 |
| CDS | 766375 | 766509 |
| CDS | 766671 | 766732 |
| CDS | 766866 | 767484 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000604 | photosynthesis,_light_harvesting Photosynthesis_-_antenna_proteins membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00504.20 | Chloroa_b-bind | 62 | 241 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Photosynthesis - antenna proteins | light-harvesting complex I chlorophyll a/b binding protein 3 | ko00196 | K08909 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009765 | photosynthesis, light harvesting |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.