PH01000121G0990's details annotation
1.Annotation
ICBR annotation: AAA-type ATPase family protein, putative, expressed
Blast result AT1G64110 : 0
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000121
Strand: +
| Region | Start | End |
| gene | 669708 | 676013 |
| mRNA | 669708 | 676013 |
| exon | 669708 | 670058 |
| exon | 670320 | 670441 |
| exon | 670540 | 670628 |
| exon | 670719 | 670754 |
| exon | 671363 | 671456 |
| exon | 671699 | 671741 |
| exon | 671827 | 671918 |
| exon | 672228 | 672286 |
| exon | 672368 | 672867 |
| exon | 672939 | 673017 |
| exon | 673103 | 673671 |
| exon | 673766 | 673901 |
| exon | 673934 | 674062 |
| exon | 674243 | 674473 |
| exon | 674585 | 674694 |
| exon | 675130 | 676013 |
| CDS | 669856 | 670058 |
| CDS | 670320 | 670441 |
| CDS | 670540 | 670628 |
| CDS | 670719 | 670754 |
| CDS | 671363 | 671456 |
| CDS | 671699 | 671741 |
| CDS | 671827 | 671918 |
| CDS | 672228 | 672286 |
| CDS | 672368 | 672867 |
| CDS | 672939 | 673017 |
| CDS | 673103 | 673671 |
| CDS | 673766 | 673901 |
| CDS | 673934 | 674062 |
| CDS | 674243 | 674473 |
| CDS | 674585 | 674694 |
| CDS | 675130 | 675433 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000066 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, Linoleic_acid_metabolism iron ion binding, metal ion binding, oxidation-reduction process, MYB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000320 | nicotinate phosphoribosyltransferase activity, nicotinate-nucleotide diphosphorylase (carboxylating) activity, adenylylsulfate_kinase_activity nicotinate nucleotide salvage, omega_peptidase_activity SNARE_interactions_in_vesicular_transport Nicotinate_and_nicotinamide_metabolism Nitrogen_metabolism sulfate assimilation, NAD biosynthetic process, nucleoside-triphosphatase activity, metal ion transmembrane transporter activity, ER to Golgi vesicle-mediated transport, magnesium_ion_transport transmembrane transport, cis-Golgi network, Golgi membrane, |
| coexpression network | CFinderM001043 | lipoxygenase activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, Linoleic_acid_metabolism iron ion binding, metal ion binding, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00004.28 | AAA | 503 | 633 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.