PH01000122G0280's details annotation
1.Annotation
ICBR annotation: hydrolase, NUDIX family, domain containing protein, expressed
Blast result AT3G12600 : 4.20E-59
Blast annotation: nudix hydrolase homolog 16
2.Location
Scaffold: PH01000122
Strand: -
| Region | Start | End |
| gene | 163621 | 169842 |
| mRNA | 163621 | 169842 |
| exon | 163621 | 163985 |
| exon | 166421 | 166504 |
| exon | 166918 | 167001 |
| exon | 167667 | 167784 |
| exon | 169387 | 169842 |
| CDS | 163710 | 163985 |
| CDS | 166421 | 166504 |
| CDS | 166918 | 167001 |
| CDS | 167667 | 167784 |
| CDS | 169387 | 169457 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00293.27 | NUDIX | 41 | 156 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.