PH01000122G0480's details annotation
1.Annotation
ICBR annotation: magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed
Blast result AT1G08520 : 1.00E-120
Blast annotation: ALBINA 1
2.Location
Scaffold: PH01000122
Strand: -
| Region | Start | End |
| gene | 267992 | 272031 |
| mRNA | 267992 | 272031 |
| exon | 267992 | 268474 |
| exon | 268948 | 268982 |
| exon | 269781 | 269904 |
| exon | 270067 | 270383 |
| exon | 270465 | 270549 |
| exon | 270752 | 270930 |
| exon | 271556 | 272031 |
| CDS | 268021 | 268474 |
| CDS | 268948 | 268982 |
| CDS | 269781 | 269904 |
| CDS | 270067 | 270383 |
| CDS | 270465 | 270549 |
| CDS | 270752 | 270930 |
| CDS | 271556 | 271816 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01078.20 | Mg_chelatase | 198 | 265 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003677 | DNA binding |
| GO:0005524 | ATP binding |
| GO:0006260 | DNA replication |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.