PH01000122G0720's details annotation
1.Annotation
ICBR annotation: ribosomal protein L36 containing protein, expressed
Blast result AT5G20180 : 1.10E-13
Blast annotation: Ribosomal protein L36
2.Location
Scaffold: PH01000122
Strand: -
| Region | Start | End |
| gene | 420843 | 423550 |
| mRNA | 420843 | 423550 |
| exon | 420843 | 421207 |
| exon | 423178 | 423550 |
| CDS | 420970 | 421207 |
| CDS | 423178 | 423392 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00444.17 | Ribosomal_L36 | 1 | 38 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L36 | ko03011 | K02919 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.