PH01000122G0840's details annotation
1.Annotation
ICBR annotation: GASR7 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed
Blast result AT5G15230 : 1.70E-28
Blast annotation: GAST1 protein homolog 4
2.Location
Scaffold: PH01000122
Strand: -
| Region | Start | End |
| gene | 499783 | 501384 |
| mRNA | 499783 | 501384 |
| exon | 499783 | 500776 |
| exon | 500896 | 500929 |
| exon | 501104 | 501384 |
| CDS | 500595 | 500776 |
| CDS | 500896 | 500929 |
| CDS | 501104 | 501211 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000310 | Glycine,_serine_and_threonine_metabolism flavin adenine dinucleotide binding, oxidoreductase activity, acting on CH-OH group of donors, Biotin_metabolism oxidation-reduction process, alcohol metabolic process, |
| coexpression network | CFinderM000441 | oxidoreductase activity, acting on CH-OH group of donors, flavin adenine dinucleotide binding, Glycine,_serine_and_threonine_metabolism choline_dehydrogenase_activity alcohol metabolic process, Biotin_metabolism Fatty_acid_biosynthesis metabolic process, |
| coexpression network | CFinderM001183 | RLK-Pelle_LRR-VI-2 (from iTAK) multicellular organismal development, CAMK_CDPK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02704.13 | GASA | 48 | 107 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.