PH01000122G1000's details annotation
1.Annotation
ICBR annotation: NAC domain-containing protein 67, putative, expressed
Blast result AT5G63790 : 1.00E-51
Blast annotation: NAC domain containing protein 102
2.Location
Scaffold: PH01000122
Strand: +
| Region | Start | End |
| gene | 581992 | 589584 |
| mRNA | 581992 | 589584 |
| exon | 581992 | 583064 |
| exon | 583870 | 584006 |
| exon | 584088 | 584177 |
| exon | 587888 | 588251 |
| exon | 588354 | 589584 |
| CDS | 582552 | 583064 |
| CDS | 583870 | 584006 |
| CDS | 584088 | 584177 |
| CDS | 587888 | 588251 |
| CDS | 588354 | 588830 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000075 | regulation of transcription, DNA-dependent, sequence-specific DNA binding transcription factor activity, integral to membrane, |
| coexpression network | CFinderM000386 | C2H2 Transcription_Regulator(from PlantTFDB) GH18 Glycoside_Hydrolases protein neddylation, Tify Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000943 | NAC Transcription_Regulator(from PlantTFDB) GH18 Glycoside_Hydrolases catalytic activity, carbohydrate metabolic process, Amino_sugar_and_nucleotide_sugar_metabolism regulation of transcription, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NAC |
| Transcription_Regulator(from PlantTFDB) | NAC |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02365.14 | NAM | 251 | 352 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003824 | catalytic activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.