PH01000122G1450's details annotation
1.Annotation
ICBR annotation: SCAR-like protein 1, putative, expressed
Blast result AT2G38440 : 9.70E-30
Blast annotation: SCAR homolog 2
2.Location
Scaffold: PH01000122
Strand: +
| Region | Start | End |
| gene | 856365 | 866381 |
| mRNA | 856365 | 866381 |
| exon | 856365 | 856717 |
| exon | 857108 | 857202 |
| exon | 858231 | 858309 |
| exon | 858594 | 858737 |
| exon | 859573 | 859582 |
| exon | 860015 | 860718 |
| exon | 860857 | 861120 |
| exon | 861253 | 861645 |
| exon | 861728 | 865590 |
| exon | 865679 | 865765 |
| exon | 865845 | 866381 |
| CDS | 856600 | 856717 |
| CDS | 857108 | 857202 |
| CDS | 858231 | 858309 |
| CDS | 858594 | 858737 |
| CDS | 859573 | 859582 |
| CDS | 860015 | 860718 |
| CDS | 860857 | 861120 |
| CDS | 861253 | 861645 |
| CDS | 861728 | 865590 |
| CDS | 865679 | 865765 |
| CDS | 865845 | 866066 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000354 | chromosome, DNA metabolic process, |
| coexpression network | CFinderM000582 | membrane, GT8 GlycosylTransferases |
| coexpression network | CFinderM000750 | CO-like Transcription_Regulator(from PlantTFDB) C2C2-CO-like Transcription_Regulator(from iTAK) zinc ion binding, intracellular, Others Transcription_Regulator(from iTAK) actin binding, protein binding, |
| coexpression network | CFinderM001191 | CO-like Transcription_Regulator(from PlantTFDB) Others Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003779 | actin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.