PH01000123G0310's details annotation
1.Annotation
ICBR annotation: VQ domain containing protein, putative, expressed
Blast result AT1G35830 : 2.50E-10
Blast annotation: VQ motif-containing protein
2.Location
Scaffold: PH01000123
Strand: -
| Region | Start | End |
| gene | 239078 | 240211 |
| mRNA | 239078 | 240211 |
| exon | 239078 | 239715 |
| exon | 239820 | 240211 |
| CDS | 239524 | 239715 |
| CDS | 239820 | 240140 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000668 | RLK-Pelle_WAK (from iTAK) polysaccharide_binding protein binding, calcium ion binding, ubiquitin ligase complex, potassium_ion_transmembrane_transport protein ubiquitination, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05678.13 | VQ | 76 | 103 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.