Annotation of co-expression genes

PH01000123G0400's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result AT4G15110 : 0.00E+00
Blast annotation: cytochrome P450, family 97, subfamily B, polypeptide 3

2.Location

Scaffold: PH01000123
Strand: -

RegionStartEnd
gene280129287640
mRNA280129287640
exon280129281200
exon281293281442
exon281616281677
exon283368283459
exon283831283919
exon284022284108
exon284222284281
exon284396284443
exon284540284713
exon284914285149
exon285519285603
exon285846285953
exon286658286838
exon287247287640
CDS280985281200
CDS281293281442
CDS281616281677
CDS283368283459
CDS283831283919
CDS284022284108
CDS284222284281
CDS284396284443
CDS284540284713
CDS284914285149
CDS285519285603
CDS285846285953
CDS286658286838
CDS287247287365

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p45098562

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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