PH01000123G1070's details annotation
1.Annotation
ICBR annotation: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
Blast result AT1G14030 : 1.70E-31
Blast annotation: Rubisco methyltransferase family protein
2.Location
Scaffold: PH01000123
Strand: +
| Region | Start | End |
| gene | 719953 | 726516 |
| mRNA | 719953 | 726516 |
| exon | 719953 | 720789 |
| exon | 722869 | 722934 |
| exon | 723069 | 723280 |
| exon | 723485 | 723655 |
| exon | 724249 | 724470 |
| exon | 724640 | 724678 |
| exon | 726209 | 726516 |
| CDS | 720759 | 720789 |
| CDS | 722869 | 722934 |
| CDS | 723069 | 723280 |
| CDS | 723485 | 723655 |
| CDS | 724249 | 724470 |
| CDS | 724640 | 724678 |
| CDS | 726209 | 726226 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.