Annotation of co-expression genes

PH01000123G1510's details annotation

1.Annotation

ICBR annotation: tubulin/FtsZ domain containing protein, putative, expressed

Blast result AT5G23860 : 0
Blast annotation: tubulin beta 8

2.Location

Scaffold: PH01000123
Strand: -

RegionStartEnd
gene10929271098296
mRNA10929271098296
exon10929271094197
exon10946091094884
exon10958701098296
CDS10935181094197
CDS10946091094884
CDS10958701096263

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00091.24Tubulin3211
PF03953.16Tubulin_C261381

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phagosometubulin betako04145K07375

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
GO:0005874microtubule
GO:0006184GTP catabolic process
GO:0007017microtubule-based process
GO:0043234protein complex
GO:0051258protein polymerization

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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