Annotation of co-expression genes

PH01000124G0130's details annotation

1.Annotation

ICBR annotation: calcium-binding mitochondrial carrier CBG00135, putative, expressed

Blast result AT5G51050 : 5.00E-111
Blast annotation: Mitochondrial substrate carrier family protein

2.Location

Scaffold: PH01000124
Strand: -

RegionStartEnd
gene8787191262
mRNA8787191262
exon8787188246
exon8852889313
exon9030491262
CDS8810188246
CDS8852889313
CDS9030490358

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001097cell proliferation,
extracellular region,
growth factor activity,
coexpression networkCFinderM001653WNK_NRBP (from iTAK)
RNA_transport

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00153.26Mito_carr88176
PF00153.26Mito_carr184272

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005509calcium ion binding
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.