PH01000124G0720's details annotation
1.Annotation
ICBR annotation: Sel1 repeat domain containing protein, putative, expressed
Blast result AT2G25570 : 8.90E-60
Blast annotation: binding
2.Location
Scaffold: PH01000124
Strand: -
| Region | Start | End |
| gene | 556174 | 560425 |
| mRNA | 556174 | 560425 |
| exon | 556174 | 557068 |
| exon | 557280 | 557325 |
| exon | 557661 | 557720 |
| exon | 557868 | 557949 |
| exon | 558740 | 558798 |
| exon | 558923 | 560425 |
| CDS | 556854 | 557068 |
| CDS | 557280 | 557325 |
| CDS | 557661 | 557720 |
| CDS | 557868 | 557949 |
| CDS | 558740 | 558798 |
| CDS | 558923 | 559021 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.