PH01000125G0950's details annotation
1.Annotation
ICBR annotation: phytoene synthase, chloroplast precursor, putative, expressed
Blast result AT5G17230 : 6.00E-138
Blast annotation: PHYTOENE SYNTHASE
2.Location
Scaffold: PH01000125
Strand: +
| Region | Start | End |
| gene | 645609 | 649417 |
| mRNA | 645609 | 649417 |
| exon | 645609 | 646233 |
| exon | 646348 | 646398 |
| exon | 646945 | 647117 |
| exon | 648016 | 648251 |
| exon | 648445 | 648544 |
| exon | 648629 | 649417 |
| CDS | 645807 | 646233 |
| CDS | 646348 | 646398 |
| CDS | 646945 | 647117 |
| CDS | 648016 | 648251 |
| CDS | 648445 | 648544 |
| CDS | 648629 | 648799 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000538 | GT61 GlycosylTransferases RLK-Pelle_PERK-1 (from iTAK) GT47 GlycosylTransferases Aminoacyl-tRNA_biosynthesis threonyl-tRNA aminoacylation, response to oxidative stress, histidine_catabolic_process_to_glutamate_and_formamide |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00494.18 | SQS_PSY | 136 | 298 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009058 | biosynthetic process |
| GO:0016740 | transferase activity |
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.