PH01000125G1190's details annotation
1.Annotation
ICBR annotation: EF hand family protein, putative, expressed
Blast result AT1G21630 : 4.20E-68
Blast annotation: Calcium-binding EF hand family protein
2.Location
Scaffold: PH01000125
Strand: -
| Region | Start | End |
| gene | 838517 | 841622 |
| mRNA | 838517 | 841622 |
| exon | 838517 | 838733 |
| exon | 838817 | 838888 |
| exon | 838984 | 839082 |
| exon | 839565 | 839636 |
| exon | 840008 | 840082 |
| exon | 840658 | 840884 |
| exon | 840984 | 841622 |
| CDS | 838611 | 838733 |
| CDS | 838817 | 838888 |
| CDS | 838984 | 839082 |
| CDS | 839565 | 839636 |
| CDS | 840008 | 840082 |
| CDS | 840658 | 840884 |
| CDS | 840984 | 841116 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001259 | phospholipid transport, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.