PH01000125G1210's details annotation
1.Annotation
ICBR annotation: EF hand family protein, putative, expressed
Blast result AT1G21630 : 1.80E-54
Blast annotation: Calcium-binding EF hand family protein
2.Location
Scaffold: PH01000125
Strand: -
| Region | Start | End |
| gene | 842970 | 846669 |
| mRNA | 842970 | 846669 |
| exon | 842970 | 843667 |
| exon | 844076 | 845195 |
| exon | 846159 | 846669 |
| CDS | 843612 | 843667 |
| CDS | 844076 | 845195 |
| CDS | 846159 | 846281 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001259 | phospholipid transport, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13202.5 | EF-hand_5 | 6 | 24 |
| PF13202.5 | EF-hand_5 | 386 | 405 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.