PH01000125G1420's details annotation
1.Annotation
ICBR annotation: HMG1/2, putative, expressed
Blast result AT1G20693 : 3.20E-29
Blast annotation: high mobility group B2
2.Location
Scaffold: PH01000125
Strand: -
| Region | Start | End |
| gene | 978461 | 980974 |
| mRNA | 978461 | 980974 |
| exon | 978461 | 978882 |
| exon | 979160 | 979273 |
| exon | 979363 | 979443 |
| exon | 979542 | 979586 |
| exon | 979701 | 979758 |
| exon | 979833 | 979946 |
| exon | 980066 | 980974 |
| CDS | 978862 | 978882 |
| CDS | 979160 | 979273 |
| CDS | 979363 | 979443 |
| CDS | 979542 | 979586 |
| CDS | 979701 | 979758 |
| CDS | 979833 | 979946 |
| CDS | 980066 | 980109 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HMG |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00505.18 | HMG_box | 42 | 111 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Base excision repair | high mobility group protein B1 | ko03410 | K10802 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.