PH01000126G0800's details annotation
1.Annotation
ICBR annotation: exportin 1, putative, expressed
Blast result AT3G05040 : 4.00E-140
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000126
Strand: +
| Region | Start | End |
| gene | 669219 | 674893 |
| mRNA | 669219 | 674893 |
| exon | 669219 | 669425 |
| exon | 670115 | 670258 |
| exon | 670367 | 670447 |
| exon | 670542 | 670611 |
| exon | 670741 | 670811 |
| exon | 670902 | 671065 |
| exon | 671144 | 671201 |
| exon | 671372 | 671548 |
| exon | 671941 | 672216 |
| exon | 673176 | 673289 |
| exon | 673411 | 673537 |
| exon | 673616 | 673785 |
| exon | 674072 | 674170 |
| exon | 674543 | 674893 |
| CDS | 669324 | 669425 |
| CDS | 670115 | 670258 |
| CDS | 670367 | 670447 |
| CDS | 670542 | 670611 |
| CDS | 670741 | 670811 |
| CDS | 670902 | 671065 |
| CDS | 671144 | 671201 |
| CDS | 671372 | 671548 |
| CDS | 671941 | 672216 |
| CDS | 673176 | 673289 |
| CDS | 673411 | 673537 |
| CDS | 673616 | 673785 |
| CDS | 674072 | 674170 |
| CDS | 674543 | 674605 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08389.11 | Xpo1 | 70 | 228 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | exportin-5 | ko03013 | K14289 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.