PH01000127G0420's details annotation
1.Annotation
ICBR annotation: eukaryotic translation initiation factor 1A, putative, expressed
Blast result AT2G04520 : 1.70E-60
Blast annotation: Nucleic acid-binding, OB-fold-like protein
2.Location
Scaffold: PH01000127
Strand: +
| Region | Start | End |
| gene | 283950 | 285958 |
| mRNA | 283950 | 285958 |
| exon | 283950 | 285958 |
| CDS | 284092 | 284520 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01176.18 | eIF-1a | 32 | 93 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | translation initiation factor 1A | ko03013 | K03236 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003743 | translation initiation factor activity |
| GO:0006413 | translational initiation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.