PH01000129G0670's details annotation
1.Annotation
ICBR annotation: calmodulin-binding transcription activator, putative, expressed
Blast result AT5G64220 : 0.00E+00
Blast annotation: Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
2.Location
Scaffold: PH01000129
Strand: +
| Region | Start | End |
| gene | 462701 | 475840 |
| mRNA | 462701 | 475840 |
| exon | 462701 | 464105 |
| exon | 465971 | 466090 |
| exon | 467127 | 467242 |
| exon | 467373 | 467461 |
| exon | 468865 | 468907 |
| exon | 470246 | 470396 |
| exon | 470713 | 471044 |
| exon | 471622 | 471996 |
| exon | 472128 | 472789 |
| exon | 472865 | 473441 |
| exon | 473841 | 474182 |
| exon | 474312 | 475840 |
| CDS | 464066 | 464105 |
| CDS | 465971 | 466090 |
| CDS | 467127 | 467242 |
| CDS | 467373 | 467461 |
| CDS | 468865 | 468907 |
| CDS | 470246 | 470396 |
| CDS | 470713 | 471044 |
| CDS | 471622 | 471996 |
| CDS | 472128 | 472789 |
| CDS | 472865 | 473441 |
| CDS | 473841 | 474182 |
| CDS | 474312 | 474422 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | CAMTA |
| Transcription_Regulator(from PlantTFDB) | CAMTA |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03859.15 | CG-1 | 21 | 134 |
| PF01833.23 | TIG | 407 | 484 |
| PF00612.26 | IQ | 805 | 824 |
| PF00612.26 | IQ | 829 | 848 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.