PH01000129G1000's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G22430 : 4.80E-52
Blast annotation: GroES-like zinc-binding dehydrogenase family protein
2.Location
Scaffold: PH01000129
Strand: +
| Region | Start | End |
| gene | 699758 | 704503 |
| mRNA | 699758 | 704503 |
| exon | 699758 | 700390 |
| exon | 701113 | 701177 |
| exon | 701274 | 701369 |
| exon | 701516 | 701677 |
| exon | 701810 | 701901 |
| exon | 702380 | 704503 |
| CDS | 700216 | 700390 |
| CDS | 701113 | 701177 |
| CDS | 701274 | 701369 |
| CDS | 701516 | 701677 |
| CDS | 701810 | 701901 |
| CDS | 702380 | 703832 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000630 | CAMK_AMPK (from iTAK) oxidoreductase_activity,_acting_on_the_CH-OH_group_of_donors,_quinone_or_similar_compound_as_acceptor |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00107.25 | ADH_zinc_N | 60 | 155 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.