PH01000130G0110's details annotation
1.Annotation
ICBR annotation: histidine triad family protein, putative
Blast result AT5G58240 : 4.20E-45
Blast annotation: FRAGILE HISTIDINE TRIAD
2.Location
Scaffold: PH01000130
Strand: -
| Region | Start | End |
| gene | 43603 | 48324 |
| mRNA | 43603 | 48324 |
| exon | 43603 | 44062 |
| exon | 44141 | 44239 |
| exon | 44533 | 44658 |
| exon | 45994 | 46163 |
| exon | 47663 | 48324 |
| CDS | 43946 | 44062 |
| CDS | 44141 | 44239 |
| CDS | 44533 | 44658 |
| CDS | 45994 | 46163 |
| CDS | 47663 | 47768 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001258 | proteasome complex, regulation of protein catabolic process, enzyme regulator activity, Proteasome RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01230.22 | HIT | 93 | 155 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.