Annotation of co-expression genes

PH01000130G0720's details annotation

1.Annotation

ICBR annotation: LTPL12 - Protease inhibitor/seed storage/LTP family protein precursor, expressed

Blast result AT2G38540 : 9.50E-24
Blast annotation: lipid transfer protein 1

2.Location

Scaffold: PH01000130
Strand: -

RegionStartEnd
gene483553484249
mRNA483553484249
exon483553483667
exon483791484249
CDS483658483667
CDS483791484113

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000634fatty acid metabolic process,
lipid transport,
lipid binding,
transition metal ion binding,
acyl-[acyl-carrier-protein] desaturase activity,
manganese ion binding,
nutrient reservoir activity,
apoplast,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00234.21Tryp_alpha_amyl29113

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006869lipid transport
GO:0008289lipid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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