PH01000130G0880's details annotation
1.Annotation
ICBR annotation: nucleotidyltransferase, putative, expressed
Blast result AT3G51620 : 3.00E-109
Blast annotation: PAP/OAS1 substrate-binding domain superfamily
2.Location
Scaffold: PH01000130
Strand: +
| Region | Start | End |
| gene | 609545 | 621589 |
| mRNA | 609545 | 621589 |
| exon | 609545 | 610009 |
| exon | 612647 | 612832 |
| exon | 614233 | 614325 |
| exon | 614522 | 614704 |
| exon | 614827 | 614929 |
| exon | 615012 | 615197 |
| exon | 615510 | 615562 |
| exon | 616116 | 616346 |
| exon | 616850 | 616928 |
| exon | 619099 | 620093 |
| exon | 620430 | 621589 |
| CDS | 609788 | 610009 |
| CDS | 612647 | 612832 |
| CDS | 614233 | 614325 |
| CDS | 614522 | 614704 |
| CDS | 614827 | 614929 |
| CDS | 615012 | 615197 |
| CDS | 615510 | 615562 |
| CDS | 616116 | 616346 |
| CDS | 616850 | 616928 |
| CDS | 619099 | 620093 |
| CDS | 620430 | 620885 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016779 | nucleotidyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.