PH01000130G0930's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G45260 : 4.50E-41
Blast annotation: Plant protein of unknown function (DUF641)
2.Location
Scaffold: PH01000130
Strand: -
| Region | Start | End |
| gene | 659087 | 662177 |
| mRNA | 659087 | 662177 |
| exon | 659087 | 662177 |
| CDS | 659721 | 660938 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001057 | RLK-Pelle_URK-1 (from iTAK) NEK (from iTAK) chromatin silencing at telomere, chromatin modification, histone acetylation, |
| coexpression network | CFinderM001058 | RLK-Pelle_URK-1 (from iTAK) NEK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04859.11 | DUF641 | 55 | 157 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.