PH01000130G1510's details annotation
1.Annotation
ICBR annotation: laccase-23 precursor, putative, expressed
Blast result AT5G05390 : 1.90E-63
Blast annotation: laccase 12
2.Location
Scaffold: PH01000130
Strand: -
| Region | Start | End |
| gene | 968571 | 970497 |
| mRNA | 968571 | 970497 |
| exon | 968571 | 968612 |
| exon | 969748 | 970156 |
| exon | 970285 | 970497 |
| CDS | 968602 | 968612 |
| CDS | 969748 | 970156 |
| CDS | 970285 | 970377 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000849 | copper ion binding, apoplast, lignin catabolic process, hydroquinone:oxygen_oxidoreductase_activity manganese ion binding, nutrient reservoir activity, oxidoreductase activity, oxidation-reduction process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07732.14 | Cu-oxidase_3 | 32 | 145 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005507 | copper ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.