Annotation of co-expression genes

PH01000132G0260's details annotation

1.Annotation

ICBR annotation: LIM domain-containing protein, putative, expressed

Blast result AT4G36860 : 2.00E-124
Blast annotation: LIM domain-containing protein

2.Location

Scaffold: PH01000132
Strand: -

RegionStartEnd
gene226000235840
mRNA226000235840
exon226000226459
exon226894226952
exon227110227228
exon227332227391
exon227483227695
exon227921228040
exon228161228220
exon228312228410
exon228741228860
exon229124229244
exon230419230584
exon231442231446
exon232328232494
exon233132233203
exon233698235840
CDS226128226459
CDS226894226952
CDS227110227228
CDS227332227391
CDS227483227695
CDS227921228040
CDS228161228220
CDS228312228410
CDS228741228860
CDS229124229244
CDS230419230584
CDS231442231446
CDS232328232494
CDS233132233203
CDS233698233775

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)Others

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00412.21LIM165210
PF12315.7DA1-like248302
PF12315.7DA1-like379591

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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