PH01000132G1210's details annotation
1.Annotation
ICBR annotation: B3 DNA binding domain containing protein, expressed
Blast result AT4G33280 : 6.90E-28
Blast annotation: AP2/B3-like transcriptional factor family protein
2.Location
Scaffold: PH01000132
Strand: -
| Region | Start | End |
| gene | 877986 | 882065 |
| mRNA | 877986 | 882065 |
| exon | 877986 | 878962 |
| exon | 879174 | 879406 |
| exon | 879486 | 879954 |
| exon | 880329 | 882065 |
| CDS | 878687 | 878962 |
| CDS | 879174 | 879406 |
| CDS | 879486 | 879954 |
| CDS | 880329 | 880445 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3 |
| Transcription_Regulator(from PlantTFDB) | B3 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 28 | 111 |
| PF02362.20 | B3 | 256 | 355 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.