PH01000133G0580's details annotation
1.Annotation
ICBR annotation: stromal membrane-associated protein, putative, expressed
Blast result AT3G07940 : 5.90E-61
Blast annotation: Calcium-dependent ARF-type GTPase activating protein family
2.Location
Scaffold: PH01000133
Strand: -
| Region | Start | End |
| gene | 338697 | 344178 |
| mRNA | 338697 | 344178 |
| exon | 338697 | 340026 |
| exon | 340524 | 340619 |
| exon | 340706 | 340828 |
| exon | 341636 | 341736 |
| exon | 342984 | 343022 |
| exon | 343594 | 343649 |
| exon | 343824 | 344178 |
| CDS | 339745 | 340026 |
| CDS | 340524 | 340619 |
| CDS | 340706 | 340828 |
| CDS | 341636 | 341736 |
| CDS | 342984 | 343022 |
| CDS | 343594 | 343649 |
| CDS | 343824 | 343879 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000078 | RLK-Pelle_LRR-V (from iTAK) RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00168.29 | C2 | 95 | 184 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.