PH01000133G0750's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G38780 : 9.10E-56
Blast annotation: -
2.Location
Scaffold: PH01000133
Strand: -
| Region | Start | End |
| gene | 436553 | 443926 |
| mRNA | 436553 | 443926 |
| exon | 436553 | 438089 |
| exon | 438234 | 438327 |
| exon | 438759 | 438787 |
| exon | 439555 | 439647 |
| exon | 439884 | 440009 |
| exon | 440579 | 440731 |
| exon | 441891 | 442324 |
| exon | 443088 | 443926 |
| CDS | 437877 | 438089 |
| CDS | 438234 | 438327 |
| CDS | 438759 | 438787 |
| CDS | 439555 | 439647 |
| CDS | 439884 | 440009 |
| CDS | 440579 | 440731 |
| CDS | 441891 | 442324 |
| CDS | 443088 | 443706 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000371 | apoplast, lignin catabolic process, hydroquinone:oxygen_oxidoreductase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.