Annotation of co-expression genes

PH01000134G0950's details annotation

1.Annotation

ICBR annotation: nodulin, putative, expressed

Blast result AT1G74780 : 4.60E-91
Blast annotation: Nodulin-like / Major Facilitator Superfamily protein

2.Location

Scaffold: PH01000134
Strand: +

RegionStartEnd
gene575201581452
mRNA575201581452
exon575201575770
exon576321576482
exon578327578353
exon579161579187
exon580239581452
CDS575321575770
CDS576321576482
CDS578327578353
CDS579161579187
CDS580239581399

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000225RLK-Pelle_L-LEC (from iTAK)
integral to membrane,
coexpression networkCFinderM000530RLK-Pelle_LRR-XIV (from iTAK)
transmembrane transport,
GRAS Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM000531transmembrane transport,
Plant_hormone_signal_transduction
coexpression networkCFinderM001127RLK-Pelle_L-LEC (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06813.12Nodulin-like10150
PF06813.12Nodulin-like220329
PF07690.15MFS_1396590

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016021integral to membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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