PH01000135G0910's details annotation
1.Annotation
ICBR annotation: hydrolase, acting on carbon-nitrogen, putative, expressed
Blast result AT2G02910 : 5.00E-100
Blast annotation: Protein of unknown function (DUF616)
2.Location
Scaffold: PH01000135
Strand: -
| Region | Start | End |
| gene | 635817 | 639045 |
| mRNA | 635817 | 639045 |
| exon | 635817 | 636355 |
| exon | 636663 | 636874 |
| exon | 637133 | 637488 |
| exon | 637922 | 637974 |
| exon | 638080 | 638182 |
| exon | 638802 | 639045 |
| CDS | 636085 | 636355 |
| CDS | 636663 | 636874 |
| CDS | 637133 | 637488 |
| CDS | 637922 | 637974 |
| CDS | 638080 | 638182 |
| CDS | 638802 | 638964 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001560 | HB-KNOX Transcription_Regulator(from iTAK) GT48 GlycosylTransferases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04765.12 | DUF616 | 135 | 374 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.