PH01000137G0030's details annotation
1.Annotation
ICBR annotation: ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Blast result AT1G67090 : 7.20E-63
Blast annotation: ribulose bisphosphate carboxylase small chain 1A
2.Location
Scaffold: PH01000137
Strand: -
| Region | Start | End |
| gene | 17894 | 19707 |
| mRNA | 17894 | 19707 |
| exon | 17894 | 18582 |
| exon | 18678 | 19707 |
| CDS | 18181 | 18582 |
| CDS | 18678 | 18809 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12338.7 | RbcS | 5 | 27 |
| PF00101.19 | RuBisCO_small | 54 | 161 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glyoxylate and dicarboxylate metabolism | ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] | ko00630 | K01602 |
| Carbon fixation in photosynthetic organisms | ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] | ko00710 | K01602 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.