PH01000138G1240's details annotation
1.Annotation
ICBR annotation: initiator-binding protein, putative, expressed
Blast result AT1G07540 : 1.90E-80
Blast annotation: TRF-like 2
2.Location
Scaffold: PH01000138
Strand: +
| Region | Start | End |
| gene | 841851 | 847900 |
| mRNA | 841851 | 847900 |
| exon | 841851 | 844433 |
| exon | 844529 | 845375 |
| exon | 845483 | 845674 |
| exon | 845761 | 845823 |
| exon | 845909 | 845988 |
| exon | 846114 | 846358 |
| exon | 846437 | 846784 |
| exon | 846869 | 846932 |
| exon | 847531 | 847900 |
| CDS | 844356 | 844433 |
| CDS | 844529 | 845375 |
| CDS | 845483 | 845674 |
| CDS | 845761 | 845823 |
| CDS | 845909 | 845988 |
| CDS | 846114 | 846358 |
| CDS | 846437 | 846784 |
| CDS | 846869 | 846932 |
| CDS | 847531 | 847707 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.