PH01000139G1200's details annotation
1.Annotation
ICBR annotation: avr9/Cf-9 rapidly elicited protein, putative, expressed
Blast result AT3G23160 : 1.10E-37
Blast annotation: Protein of unknown function (DUF668)
2.Location
Scaffold: PH01000139
Strand: +
| Region | Start | End |
| gene | 871628 | 884127 |
| mRNA | 871628 | 884127 |
| exon | 871628 | 873173 |
| exon | 883158 | 883272 |
| exon | 883439 | 883534 |
| exon | 884073 | 884127 |
| CDS | 871894 | 873173 |
| CDS | 883158 | 883272 |
| CDS | 883439 | 883534 |
| CDS | 884073 | 884093 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11961.7 | DUF3475 | 24 | 79 |
| PF05003.11 | DUF668 | 322 | 414 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.