PH01000139G1240's details annotation
1.Annotation
ICBR annotation: pumilio-family RNA binding protein, putative, expressed
Blast result AT2G29190 : 0.00E+00
Blast annotation: pumilio 2
2.Location
Scaffold: PH01000139
Strand: -
| Region | Start | End |
| gene | 918061 | 927581 |
| mRNA | 918061 | 927581 |
| exon | 918061 | 918477 |
| exon | 919737 | 919847 |
| exon | 919933 | 920145 |
| exon | 920235 | 920342 |
| exon | 920474 | 920615 |
| exon | 920950 | 922496 |
| exon | 923738 | 924267 |
| exon | 924315 | 924421 |
| exon | 925855 | 925982 |
| exon | 926550 | 927581 |
| CDS | 918145 | 918477 |
| CDS | 919737 | 919847 |
| CDS | 919933 | 920145 |
| CDS | 920235 | 920342 |
| CDS | 920474 | 920615 |
| CDS | 920950 | 922496 |
| CDS | 923738 | 924267 |
| CDS | 924315 | 924421 |
| CDS | 925855 | 925982 |
| CDS | 926550 | 926744 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07990.11 | NABP | 410 | 826 |
| PF00806.18 | PUF | 827 | 860 |
| PF00806.18 | PUF | 866 | 894 |
| PF00806.18 | PUF | 900 | 931 |
| PF00806.18 | PUF | 937 | 968 |
| PF00806.18 | PUF | 973 | 1005 |
| PF00806.18 | PUF | 1009 | 1041 |
| PF00806.18 | PUF | 1045 | 1074 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.