PH01000140G0100's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G19895 : 1.00E-130
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000140
Strand: +
| Region | Start | End |
| gene | 54185 | 63013 |
| mRNA | 54185 | 63013 |
| exon | 54185 | 56336 |
| exon | 57173 | 57362 |
| exon | 57610 | 57752 |
| exon | 57891 | 58065 |
| exon | 58285 | 58346 |
| exon | 58604 | 58685 |
| exon | 59779 | 59836 |
| exon | 59926 | 60050 |
| exon | 60133 | 60225 |
| exon | 60319 | 60389 |
| exon | 60526 | 60661 |
| exon | 60881 | 60975 |
| exon | 61178 | 61221 |
| exon | 61559 | 61653 |
| exon | 61834 | 61925 |
| exon | 62849 | 63013 |
| CDS | 56068 | 56336 |
| CDS | 57173 | 57362 |
| CDS | 57610 | 57752 |
| CDS | 57891 | 58065 |
| CDS | 58285 | 58346 |
| CDS | 58604 | 58685 |
| CDS | 59779 | 59836 |
| CDS | 59926 | 60050 |
| CDS | 60133 | 60225 |
| CDS | 60319 | 60389 |
| CDS | 60526 | 60661 |
| CDS | 60881 | 60975 |
| CDS | 61178 | 61221 |
| CDS | 61559 | 61653 |
| CDS | 61834 | 61925 |
| CDS | 62849 | 62933 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.