PH01000140G0280's details annotation
1.Annotation
ICBR annotation: jmjC domain containing protein, expressed
Blast result AT4G00990 : 5.00E-151
Blast annotation: Transcription factor jumonji (jmjC) domain-containing protein
2.Location
Scaffold: PH01000140
Strand: -
| Region | Start | End |
| gene | 178400 | 188263 |
| mRNA | 178400 | 188263 |
| exon | 178400 | 179115 |
| exon | 179209 | 179273 |
| exon | 179369 | 179488 |
| exon | 179585 | 179670 |
| exon | 179768 | 179840 |
| exon | 180001 | 180371 |
| exon | 180461 | 180701 |
| exon | 180980 | 181312 |
| exon | 181794 | 182498 |
| exon | 183060 | 183159 |
| exon | 183461 | 183591 |
| exon | 183685 | 183864 |
| exon | 184478 | 184651 |
| exon | 185297 | 185455 |
| exon | 186303 | 186461 |
| exon | 187197 | 188263 |
| CDS | 178938 | 179115 |
| CDS | 179209 | 179273 |
| CDS | 179369 | 179488 |
| CDS | 179585 | 179670 |
| CDS | 179768 | 179840 |
| CDS | 180001 | 180371 |
| CDS | 180461 | 180701 |
| CDS | 180980 | 181312 |
| CDS | 181794 | 182498 |
| CDS | 183060 | 183159 |
| CDS | 183461 | 183591 |
| CDS | 183685 | 183864 |
| CDS | 184478 | 184651 |
| CDS | 185297 | 185455 |
| CDS | 186303 | 186461 |
| CDS | 187197 | 187475 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Jumonji |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10497.8 | zf-4CXXC_R1 | 326 | 393 |
| PF02373.21 | JmjC | 902 | 1006 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.