PH01000140G0390's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G17820 : 4.00E-158
Blast annotation: Putative integral membrane protein conserved region (DUF2404)
2.Location
Scaffold: PH01000140
Strand: -
| Region | Start | End |
| gene | 264089 | 270439 |
| mRNA | 264089 | 270439 |
| exon | 264089 | 266055 |
| exon | 266138 | 266332 |
| exon | 266522 | 266613 |
| exon | 267042 | 267396 |
| exon | 267474 | 268155 |
| exon | 268533 | 268777 |
| exon | 270154 | 270439 |
| CDS | 265357 | 266055 |
| CDS | 266138 | 266332 |
| CDS | 266522 | 266613 |
| CDS | 267042 | 267396 |
| CDS | 267474 | 268155 |
| CDS | 268533 | 268777 |
| CDS | 270154 | 270333 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000207 | anion transport, GT8 GlycosylTransferases RLK-Pelle_LRR-XI-1 (from iTAK) inorganic anion exchanger activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.