PH01000140G0680's details annotation
1.Annotation
ICBR annotation: AT hook motif domain containing protein, expressed
Blast result AT2G45850 : 2.20E-35
Blast annotation: AT hook motif DNA-binding family protein
2.Location
Scaffold: PH01000140
Strand: +
| Region | Start | End |
| gene | 502543 | 508471 |
| mRNA | 502543 | 508471 |
| exon | 502543 | 504941 |
| exon | 505716 | 505783 |
| exon | 506575 | 506723 |
| exon | 507343 | 507504 |
| exon | 507749 | 508471 |
| CDS | 504316 | 504941 |
| CDS | 505716 | 505783 |
| CDS | 506575 | 506723 |
| CDS | 507343 | 507504 |
| CDS | 507749 | 507973 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03479.14 | DUF296 | 237 | 341 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.