PH01000140G1140's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G25620 : 3.00E-41
Blast annotation: hydroxyproline-rich glycoprotein family protein
2.Location
Scaffold: PH01000140
Strand: -
| Region | Start | End |
| gene | 861506 | 864049 |
| mRNA | 861506 | 864049 |
| exon | 861506 | 864049 |
| CDS | 862880 | 863770 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000447 | CMGC_MAPK (from iTAK) C3H Transcription_Regulator(from PlantTFDB) ubiquitin ligase complex, extracellular region, |
| coexpression network | CFinderM000986 | CMGC_MAPK (from iTAK) HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.