PH01000141G0910's details annotation
1.Annotation
ICBR annotation: DUF647 domain containing protein, putative, expressed
Blast result AT2G02500 : 9.40E-74
Blast annotation: Nucleotide-diphospho-sugar transferases superfamily protein
2.Location
Scaffold: PH01000141
Strand: +
| Region | Start | End |
| gene | 568950 | 578912 |
| mRNA | 568950 | 578912 |
| exon | 568950 | 569477 |
| exon | 570264 | 570362 |
| exon | 570440 | 570553 |
| exon | 570974 | 571045 |
| exon | 571148 | 571258 |
| exon | 571374 | 571493 |
| exon | 571940 | 572012 |
| exon | 573083 | 573163 |
| exon | 573248 | 573312 |
| exon | 573421 | 573522 |
| exon | 573613 | 573771 |
| exon | 574022 | 574094 |
| exon | 574862 | 575082 |
| exon | 576041 | 576179 |
| exon | 576212 | 576315 |
| exon | 576586 | 576886 |
| exon | 577053 | 577135 |
| exon | 577239 | 577316 |
| exon | 577671 | 577739 |
| exon | 577940 | 578008 |
| exon | 578148 | 578194 |
| exon | 578279 | 578912 |
| CDS | 569157 | 569477 |
| CDS | 570264 | 570362 |
| CDS | 570440 | 570553 |
| CDS | 570974 | 571045 |
| CDS | 571148 | 571258 |
| CDS | 571374 | 571493 |
| CDS | 571940 | 572012 |
| CDS | 573083 | 573163 |
| CDS | 573248 | 573312 |
| CDS | 573421 | 573522 |
| CDS | 573613 | 573771 |
| CDS | 574022 | 574094 |
| CDS | 574862 | 575082 |
| CDS | 576041 | 576179 |
| CDS | 576212 | 576315 |
| CDS | 576586 | 576886 |
| CDS | 577053 | 577135 |
| CDS | 577239 | 577316 |
| CDS | 577671 | 577739 |
| CDS | 577940 | 578008 |
| CDS | 578148 | 578194 |
| CDS | 578279 | 578498 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04884.13 | DUF647 | 107 | 280 |
| PF01128.18 | IspD | 685 | 865 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008299 | isoprenoid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.